IL_6SWA_040

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_040 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2234

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6SWA|1|q|A|1078
6SWA|1|q|C|1079
*
6SWA|1|q|G|1182
6SWA|1|q|G|1183
6SWA|1|q|U|1184

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain Q

60S ribosomal protein L18a

Chain R

60S ribosomal protein L21