IL_6SWA_044

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*GGGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_044 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3032

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SWA|1|q|G|1408
6SWA|1|q|G|1409
6SWA|1|q|A|1410
6SWA|1|q|U|1411
6SWA|1|q|C|1412
*
6SWA|1|q|G|1437
6SWA|1|q|G|1438
6SWA|1|q|G|1439
6SWA|1|q|C|1440
6SWA|1|q|A|1441
6SWA|1|q|C|1442

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain P

60S ribosomal protein L18

Chain Z

60S ribosomal protein L29