IL_6SWA_051

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_051 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1425

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6SWA|1|q|C|1533
6SWA|1|q|G|1534
6SWA|1|q|A|1535
6SWA|1|q|A|1536
6SWA|1|q|G|1537
*
6SWA|1|q|U|1554
6SWA|1|q|G|1555
6SWA|1|q|G|1556
6SWA|1|q|A|1557
6SWA|1|q|G|1558

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain n

60S ribosomal protein L37a

Chain o

60S ribosomal protein L19