IL_6SWA_054
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6SWA|1|q|G|1607, 6SWA|1|q|A|1619, 6SWA|1|q|A|1620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_054 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.1227
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SWA|1|q|G|1606
6SWA|1|q|G|1607
6SWA|1|q|G|1608
*
6SWA|1|q|U|1618
6SWA|1|q|A|1619
6SWA|1|q|A|1620
6SWA|1|q|U|1621
6SWA|1|q|C|1622
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain M
- 60S ribosomal protein L15
- Chain O
- 60S ribosomal protein L17
- Chain h
- 60S ribosomal protein L37
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