IL_6SWA_061
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6SWA|1|q|G|1723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_061 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1168
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6SWA|1|q|G|1721
6SWA|1|q|C|1722
6SWA|1|q|G|1723
6SWA|1|q|A|1724
6SWA|1|q|A|1725
6SWA|1|q|U|1726
*
6SWA|1|q|A|1768
6SWA|1|q|A|1769
6SWA|1|q|A|1770
6SWA|1|q|C|1771
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L10
- Chain R
- 60S ribosomal protein L21
- Chain s
- 5S ribosomal RNA; 5S rRNA
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