IL_6SWA_074
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6SWA|1|q|C|1916, 6SWA|1|q|A|2022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_074 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1909
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|q|G|1914
6SWA|1|q|A|1915
6SWA|1|q|C|1916
6SWA|1|q|C|1917
6SWA|1|q|C|1918
6SWA|1|q|C|1919
6SWA|1|q|A|1920
6SWA|1|q|G|1921
6SWA|1|q|A|1922
6SWA|1|q|A|1923
6SWA|1|q|A|1924
6SWA|1|q|A|1925
*
6SWA|1|q|U|2019
6SWA|1|q|G|2020
6SWA|1|q|A|2021
6SWA|1|q|A|2022
6SWA|1|q|A|2023
6SWA|1|q|A|2024
6SWA|1|q|U|2025
6SWA|1|q|G|2026
6SWA|1|q|G|2027
6SWA|1|q|A|2028
6SWA|1|q|U|2029
6SWA|1|q|G|2030
6SWA|1|q|G|2031
6SWA|1|q|C|2032
6SWA|1|q|G|2033
6SWA|1|q|C|2034
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L10
- Chain N
- 60S ribosomal protein L13a
- Chain d
- 60S ribosomal protein L35a
- Chain k
- Ubiquitin-60S ribosomal protein L40
- Chain s
- 5S ribosomal RNA; 5S rRNA
Coloring options: