IL_6SWA_079
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 6SWA|1|q|G|2322
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_079 not in the Motif Atlas
- Homologous match to IL_8C3A_061
- Geometric discrepancy: 0.098
- The information below is about IL_8C3A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SWA|1|q|C|2269
6SWA|1|q|G|2270
6SWA|1|q|C|2271
*
6SWA|1|q|G|2321
6SWA|1|q|G|2322
6SWA|1|q|U|2323
6SWA|1|q|G|2324
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L32
- Chain p
- 60S ribosomal protein L28
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: