IL_6SWA_084
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_084 not in the Motif Atlas
- Geometric match to IL_7A0S_046
- Geometric discrepancy: 0.1371
- The information below is about IL_7A0S_046
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
6SWA|1|q|G|2385
6SWA|1|q|G|2386
6SWA|1|q|U|2387
6SWA|1|q|U|2388
*
6SWA|1|q|A|2762
6SWA|1|q|C|2763
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain V
- 60S ribosomal protein L23a
- Chain e
- 60S ribosomal protein L34
- Chain h
- 60S ribosomal protein L37
- Chain j
- 60S ribosomal protein L39
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