IL_6SWA_089

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

6SWA|1|q|U|2748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_089 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2514

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6SWA|1|q|G|2528
6SWA|1|q|G|2529
*
6SWA|1|q|C|2747
6SWA|1|q|U|2748
6SWA|1|q|C|2749

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain e

60S ribosomal protein L34

Chain i

60S ribosomal protein L38