IL_6SWA_100

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6SWA|1|q|G|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_100 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.229

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|A|2829
6SWA|1|q|G|2830
6SWA|1|q|U|2831
6SWA|1|q|C|2832
6SWA|1|q|G|2833
6SWA|1|q|G|2834
*
6SWA|1|q|C|3808
6SWA|1|q|U|3809
6SWA|1|q|G|3810
6SWA|1|q|U|3811

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain T

60S ribosomal protein L23