IL_6SWA_101

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6SWA|1|q|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_101 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1408

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6SWA|1|q|C|2846
6SWA|1|q|G|2847
6SWA|1|q|U|2848
6SWA|1|q|A|2849
6SWA|1|q|A|2850
6SWA|1|q|C|2851
*
6SWA|1|q|G|2856
6SWA|1|q|G|2857
6SWA|1|q|A|2858
6SWA|1|q|U|2859
6SWA|1|q|A|2860
6SWA|1|q|A|2861
6SWA|1|q|G|2862

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain l

60S ribosomal protein L41

Chain n

60S ribosomal protein L37a