IL_6SWA_110
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_110 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1779
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SWA|1|q|U|3686
6SWA|1|q|C|3687
6SWA|1|q|A|3688
6SWA|1|q|A|3689
6SWA|1|q|A|3690
6SWA|1|q|G|3691
6SWA|1|q|U|3692
*
6SWA|1|q|A|3703
6SWA|1|q|A|3704
6SWA|1|q|U|3705
6SWA|1|q|G|3706
6SWA|1|q|A|3707
6SWA|1|q|A|3708
6SWA|1|q|G|3709
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain g
- 60S ribosomal protein L36
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