IL_6SWA_112

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6SWA|1|q|A|3756, 6SWA|1|q|C|3762, 6SWA|1|q|C|3781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_112 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1952

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6SWA|1|q|C|3752
6SWA|1|q|C|3753
6SWA|1|q|A|3754
6SWA|1|q|A|3755
6SWA|1|q|A|3756
6SWA|1|q|U|3757
6SWA|1|q|G|3758
6SWA|1|q|C|3759
6SWA|1|q|C|3760
6SWA|1|q|U|3761
6SWA|1|q|C|3762
6SWA|1|q|G|3763
*
6SWA|1|q|C|3779
6SWA|1|q|G|3780
6SWA|1|q|C|3781
6SWA|1|q|G|3782

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain l

60S ribosomal protein L41