IL_6SWA_120

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGUAGAAUAAG*CUACU

Length

19 nucleotides

Bulged bases

6SWA|1|q|A|3933, 6SWA|1|q|A|3934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_120 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3115

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6SWA|1|q|A|3925
6SWA|1|q|G|3926
6SWA|1|q|G|3927
6SWA|1|q|U|3928
6SWA|1|q|G|3929
6SWA|1|q|U|3930
6SWA|1|q|A|3931
6SWA|1|q|G|3932
6SWA|1|q|A|3933
6SWA|1|q|A|3934
6SWA|1|q|U|3935
6SWA|1|q|A|3936
6SWA|1|q|A|3937
6SWA|1|q|G|3938
*
6SWA|1|q|C|4024
6SWA|1|q|U|4025
6SWA|1|q|A|4026
6SWA|1|q|C|4027
6SWA|1|q|U|4028

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains