IL_6SWA_121

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

6SWA|1|q|A|4016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_121 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3822

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6SWA|1|q|G|3941
6SWA|1|q|G|3942
6SWA|1|q|A|3943
6SWA|1|q|G|3944
*
6SWA|1|q|C|4008
6SWA|1|q|G|4009
6SWA|1|q|C|4010
6SWA|1|q|C|4011
6SWA|1|q|G|4012
6SWA|1|q|G|4013
6SWA|1|q|U|4014
6SWA|1|q|G|4015
6SWA|1|q|A|4016
6SWA|1|q|A|4017
6SWA|1|q|A|4018
6SWA|1|q|U|4019
6SWA|1|q|A|4020
6SWA|1|q|C|4021

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains