IL_6SWA_125
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_125 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.2275
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SWA|1|q|C|4205
6SWA|1|q|A|4206
6SWA|1|q|G|4207
*
6SWA|1|q|C|4225
6SWA|1|q|G|4226
6SWA|1|q|U|4227
6SWA|1|q|G|4228
6SWA|1|q|G|4229
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11
- Chain R
- 60S ribosomal protein L21
- Chain s
- 5S ribosomal RNA; 5S rRNA
Coloring options: