IL_6SWA_141

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6SWA|1|q|U|4596, 6SWA|1|q|U|4598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_141 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.3084

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6SWA|1|q|U|4594
6SWA|1|q|G|4595
6SWA|1|q|U|4596
6SWA|1|q|A|4597
6SWA|1|q|U|4598
6SWA|1|q|G|4599
*
6SWA|1|q|C|4624
6SWA|1|q|G|4625
6SWA|1|q|A|4626
6SWA|1|q|A|4627
6SWA|1|q|G|4628

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain U

60S ribosomal protein L24

Chain b

60S ribosomal protein L31