IL_6SWA_142

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_142 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.2375

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6SWA|1|q|U|4600
6SWA|1|q|G|4601
6SWA|1|q|C|4602
*
6SWA|1|q|G|4621
6SWA|1|q|G|4622
6SWA|1|q|G|4623

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain U

60S ribosomal protein L24

Chain b

60S ribosomal protein L31