IL_6SWA_144

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6SWA|1|q|A|4670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_144 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2322

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SWA|1|q|G|4642
6SWA|1|q|A|4643
6SWA|1|q|U|4644
6SWA|1|q|U|4645
6SWA|1|q|A|4646
6SWA|1|q|U|4647
*
6SWA|1|q|A|4667
6SWA|1|q|G|4668
6SWA|1|q|A|4669
6SWA|1|q|A|4670
6SWA|1|q|U|4671
6SWA|1|q|C|4672

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain H

60S ribosomal protein L9

Chain N

60S ribosomal protein L13a

Chain k

Ubiquitin-60S ribosomal protein L40