IL_6SWA_145

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCG*CUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_145 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3569

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6SWA|1|q|C|4701
6SWA|1|q|G|4702
6SWA|1|q|C|4703
6SWA|1|q|G|4704
*
6SWA|1|q|C|4916
6SWA|1|q|U|4917
6SWA|1|q|G|4918

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains