IL_6SWA_157
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 6SWA|1|r|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_157 not in the Motif Atlas
- Geometric match to IL_5TBW_145
- Geometric discrepancy: 0.2522
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6SWA|1|r|U|64
6SWA|1|r|A|65
6SWA|1|r|A|66
*
6SWA|1|r|U|92
6SWA|1|r|C|93
6SWA|1|r|G|94
6SWA|1|r|A|95
Current chains
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain W
- 60S ribosomal protein L26
- Chain f
- 60S ribosomal protein L35
- Chain h
- 60S ribosomal protein L37
- Chain q
- Large subunit ribosomal RNA; LSU rRNA
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