IL_6SWA_162
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_162 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2773
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SWA|1|s|G|71
6SWA|1|s|U|72
6SWA|1|s|U|73
6SWA|1|s|A|74
6SWA|1|s|G|75
6SWA|1|s|U|76
6SWA|1|s|A|77
6SWA|1|s|C|78
*
6SWA|1|s|G|98
6SWA|1|s|G|99
6SWA|1|s|A|100
6SWA|1|s|A|101
6SWA|1|s|U|102
6SWA|1|s|A|103
6SWA|1|s|C|104
Current chains
- Chain s
- PREDICTED: Mus musculus 5S ribosomal RNA (LOC115487073), rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain F
- 60S ribosomal protein L7
- Chain I
- 60S ribosomal protein L10
- Chain Q
- 60S ribosomal protein L18a
- Chain q
- Large subunit ribosomal RNA; LSU rRNA
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