IL_6SWA_164
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 6SWA|1|s|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_164 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1122
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6SWA|1|s|G|82
6SWA|1|s|A|83
6SWA|1|s|U|84
6SWA|1|s|G|85
*
6SWA|1|s|C|92
6SWA|1|s|G|93
6SWA|1|s|C|94
Current chains
- Chain s
- PREDICTED: Mus musculus 5S ribosomal RNA (LOC115487073), rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain I
- 60S ribosomal protein L10
- Chain Q
- 60S ribosomal protein L18a
- Chain q
- Large subunit ribosomal RNA; LSU rRNA
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