IL_6SWA_165
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUC*GUC
- Length
- 7 nucleotides
- Bulged bases
- 6SWA|1|q|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_165 not in the Motif Atlas
- Geometric match to IL_8C3A_149
- Geometric discrepancy: 0.1422
- The information below is about IL_8C3A_149
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
6SWA|1|q|G|11
6SWA|1|q|A|12
6SWA|1|q|U|13
6SWA|1|q|C|14
*
6SWA|1|r|G|143
6SWA|1|r|U|144
6SWA|1|r|C|145
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain M
- 60S ribosomal protein L15
- Chain V
- 60S ribosomal protein L23a
Coloring options: