IL_6SWA_205

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_205 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.3506

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6SWA|1|q|U|4843
6SWA|1|q|C|4844
6SWA|1|q|C|4845
6SWA|1|q|U|4846
6SWA|1|q|G|4847
*
6SWA|1|q|C|4888
6SWA|1|q|G|4889
6SWA|1|q|U|4890
6SWA|1|q|C|4891
6SWA|1|q|A|4892

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain E

60S ribosomal protein L6

Chain L

60S ribosomal protein L14