IL_6SWC_011

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAGG*C(4AC)GAAGAUC

Length

16 nucleotides

Bulged bases

6SWC|1|2|U|253, 6SWC|1|2|A|289

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|251
6SWC|1|2|A|252
6SWC|1|2|U|253
6SWC|1|2|U|254
6SWC|1|2|A|255
6SWC|1|2|G|256
6SWC|1|2|G|257
*
6SWC|1|2|C|285
6SWC|1|2|4AC|286
6SWC|1|2|G|287
6SWC|1|2|A|288
6SWC|1|2|A|289
6SWC|1|2|G|290
6SWC|1|2|A|291
6SWC|1|2|U|292
6SWC|1|2|C|293

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17