3D structure

PDB id
6SWC (explore in PDB, NAKB, or RNA 3D Hub)
Description
IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GC*GGAGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SWC|1|2|G|301
6SWC|1|2|C|302
*
6SWC|1|2|G|313
6SWC|1|2|G|314
6SWC|1|2|A|315
6SWC|1|2|G|316
6SWC|1|2|C|317

Current chains

Chain 2
16S ribosomal rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain E
30S ribosomal protein S4e
Chain N
30S ribosomal protein S12

Coloring options:

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