IL_6SWC_021

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGGCAAGGC*GCG

Length

13 nucleotides

Bulged bases

6SWC|1|2|G|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|U|469
6SWC|1|2|G|470
6SWC|1|2|G|471
6SWC|1|2|G|472
6SWC|1|2|C|473
6SWC|1|2|A|474
6SWC|1|2|A|475
6SWC|1|2|G|476
6SWC|1|2|G|477
6SWC|1|2|C|478
*
6SWC|1|2|G|505
6SWC|1|2|C|506
6SWC|1|2|G|507

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain F

30S ribosomal protein S5

Chain N

30S ribosomal protein S12

Chain Z

30S ribosomal protein S3