IL_6SWC_023

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6SWC|1|2|A|498, 6SWC|1|2|U|500, 6SWC|1|2|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|481
6SWC|1|2|U|482
6SWC|1|2|G|483
6SWC|1|2|G|484
6SWC|1|2|C|485
6SWC|1|2|A|486
6SWC|1|2|G|487
*
6SWC|1|2|C|494
6SWC|1|2|G|495
6SWC|1|2|G|496
6SWC|1|2|U|497
6SWC|1|2|A|498
6SWC|1|2|A|499
6SWC|1|2|U|500
6SWC|1|2|A|501
6SWC|1|2|C|502

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 5

mRNA

Chain 6

Translation initiation factor 1A

Chain N

30S ribosomal protein S12

Chain Z

30S ribosomal protein S3