IL_6SWC_032

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAGAG*UGGAAC

Length

13 nucleotides

Bulged bases

6SWC|1|2|A|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|627
6SWC|1|2|G|628
6SWC|1|2|G|629
6SWC|1|2|A|630
6SWC|1|2|G|631
6SWC|1|2|A|632
6SWC|1|2|G|633
*
6SWC|1|2|U|707
6SWC|1|2|G|708
6SWC|1|2|G|709
6SWC|1|2|A|710
6SWC|1|2|A|711
6SWC|1|2|C|712

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain A

30S ribosomal protein S3Ae

Chain Q

30S ribosomal protein S15

Chain W

30S ribosomal protein S27e