IL_6SWC_036

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAG*CUAUAAUC

Length

13 nucleotides

Bulged bases

6SWC|1|2|U|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|651
6SWC|1|2|G|652
6SWC|1|2|U|653
6SWC|1|2|A|654
6SWC|1|2|G|655
*
6SWC|1|2|C|666
6SWC|1|2|U|667
6SWC|1|2|A|668
6SWC|1|2|U|669
6SWC|1|2|A|670
6SWC|1|2|A|671
6SWC|1|2|U|672
6SWC|1|2|C|673

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 9

Translation initiation factor 2 subunit alpha

Chain A

30S ribosomal protein S3Ae

Chain M

30S ribosomal protein S11