IL_6SWC_063
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- G(OMC)C(5HM)G*CG(UR3)A(6MZ)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 5HM, UR3, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWC|1|2|G|1375
6SWC|1|2|OMC|1376
6SWC|1|2|C|1377
6SWC|1|2|5HM|1378
6SWC|1|2|G|1379
*
6SWC|1|2|C|1465
6SWC|1|2|G|1466
6SWC|1|2|UR3|1467
6SWC|1|2|A|1468
6SWC|1|2|6MZ|1469
6SWC|1|2|C|1470
Current chains
- Chain 2
- 16S ribosomal rRNA
Nearby chains
- Chain 0
- 30S ribosomal protein aL41
- Chain 4
- Transfer RNA; tRNA
- Chain 5
- mRNA
Coloring options: