IL_6SWC_063

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(OMC)C(5HM)G*CG(UR3)A(6MZ)C

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 5HM, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|1375
6SWC|1|2|OMC|1376
6SWC|1|2|C|1377
6SWC|1|2|5HM|1378
6SWC|1|2|G|1379
*
6SWC|1|2|C|1465
6SWC|1|2|G|1466
6SWC|1|2|UR3|1467
6SWC|1|2|A|1468
6SWC|1|2|6MZ|1469
6SWC|1|2|C|1470

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 0

30S ribosomal protein aL41

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA