IL_6SWC_080

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAUGG*UCAGUAUG

Length

15 nucleotides

Bulged bases

6SWC|1|2|C|1019, 6SWC|1|2|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|U|1017
6SWC|1|2|G|1018
6SWC|1|2|C|1019
6SWC|1|2|A|1020
6SWC|1|2|U|1021
6SWC|1|2|G|1022
6SWC|1|2|G|1023
*
6SWC|1|2|U|1173
6SWC|1|2|C|1174
6SWC|1|2|A|1175
6SWC|1|2|G|1176
6SWC|1|2|U|1177
6SWC|1|2|A|1178
6SWC|1|2|U|1179
6SWC|1|2|G|1180

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain 5

mRNA

Chain L

30S ribosomal protein S10

Chain P

30S ribosomal protein S14 type Z

Chain Z

30S ribosomal protein S3