IL_6SXO_001

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

6SXO|1|L5|G|409, 6SXO|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SXO_001 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1437

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6SXO|1|L5|G|387
6SXO|1|L5|A|388
6SXO|1|L5|A|389
6SXO|1|L5|C|390
*
6SXO|1|L5|G|401
6SXO|1|L5|A|402
6SXO|1|L5|G|403
6SXO|1|L5|U|404
6SXO|1|L5|U|405
6SXO|1|L5|C|406
6SXO|1|L5|A|407
6SXO|1|L5|A|408
6SXO|1|L5|G|409
6SXO|1|L5|A|410
6SXO|1|L5|G|411
6SXO|1|L5|G|412
6SXO|1|L5|G|413
6SXO|1|L5|C|414

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain A

Proliferation-associated protein 2G4

Chain LY

60S ribosomal protein L26