IL_6SXO_003

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

6SXO|1|L5|G|2903, 6SXO|1|L5|U|3595, 6SXO|1|L5|A|3596

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SXO|1|L5|G|2901
6SXO|1|L5|G|2902
6SXO|1|L5|G|2903
6SXO|1|L5|U|2904
6SXO|1|L5|C|2905
*
6SXO|1|L5|G|3589
6SXO|1|L5|G|3590
6SXO|1|L5|C|3591
6SXO|1|L5|G|3592
6SXO|1|L5|C|3593
6SXO|1|L5|C|3594
6SXO|1|L5|U|3595
6SXO|1|L5|A|3596
6SXO|1|L5|G|3597
6SXO|1|L5|C|3598

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain LR

60S ribosomal protein L19