IL_6SXO_016

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

6SXO|1|L5|C|3579

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SXO_016 not in the Motif Atlas

Geometric match to IL_6CK5_003

Geometric discrepancy: 0.3079

The information below is about IL_6CK5_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6SXO|1|L5|C|3287
6SXO|1|L5|G|3288
*
6SXO|1|L5|U|3578
6SXO|1|L5|C|3579
6SXO|1|L5|G|3580

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains