IL_6SY4_001
3D structure
- PDB id
- 6SY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- TetR in complex with the TetR-binding RNA-aptamer K1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.69 Å
Loop
- Sequence
- GAGAAUGUUAUGG*CAGAGAAAAC
- Length
- 23 nucleotides
- Bulged bases
- 6SY4|1|C|U|16
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_53581.1
- Basepair signature
- cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SY4|1|C|G|6
6SY4|1|C|A|7
6SY4|1|C|G|8
6SY4|1|C|A|9
6SY4|1|C|A|10
6SY4|1|C|U|11
6SY4|1|C|G|12
6SY4|1|C|U|13
6SY4|1|C|U|14
6SY4|1|C|A|15
6SY4|1|C|U|16
6SY4|1|C|G|17
6SY4|1|C|G|18
*
6SY4|1|C|C|29
6SY4|1|C|A|30
6SY4|1|C|G|31
6SY4|1|C|A|32
6SY4|1|C|G|33
6SY4|1|C|A|34
6SY4|1|C|A|35
6SY4|1|C|A|36
6SY4|1|C|A|37
6SY4|1|C|C|38
Current chains
- Chain C
- TetR-binding aptamer K1 (43-MER)
Nearby chains
- Chain A
- Tetracycline repressor protein class B from transposon Tn10
- Chain B
- Tetracycline repressor protein class B from transposon Tn10
Coloring options: