IL_6SY6_001

3D structure

PDB id

6SY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

TetR in complex with the TetR-binding RNA-aptamer K2

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGAAUGUUAUGG*CAGAGAAAAC

Length

23 nucleotides

Bulged bases

6SY6|1|D|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_53581.1

Basepair signature

cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6SY6|1|D|G|5
6SY6|1|D|A|6
6SY6|1|D|G|7
6SY6|1|D|A|8
6SY6|1|D|A|9
6SY6|1|D|U|10
6SY6|1|D|G|11
6SY6|1|D|U|12
6SY6|1|D|U|13
6SY6|1|D|A|14
6SY6|1|D|U|15
6SY6|1|D|G|16
6SY6|1|D|G|17
*
6SY6|1|D|C|26
6SY6|1|D|A|27
6SY6|1|D|G|28
6SY6|1|D|A|29
6SY6|1|D|G|30
6SY6|1|D|A|31
6SY6|1|D|A|32
6SY6|1|D|A|33
6SY6|1|D|A|34
6SY6|1|D|C|35

Current chains

Chain D

RNA (36-MER)

Nearby chains

Chain A

Tetracycline repressor protein class B from transposon Tn10

Chain B

Tetracycline repressor protein class B from transposon Tn10