IL_6SZS_010

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_010 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.125

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6SZS|1|A|U|293
6SZS|1|A|A|294
6SZS|1|A|G|295
*
6SZS|1|A|C|343
6SZS|1|A|A|344
6SZS|1|A|A|345
6SZS|1|A|A|346
6SZS|1|A|A|347

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24