IL_6SZS_016

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6SZS|1|A|G|801, 6SZS|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0852

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6SZS|1|A|G|674
6SZS|1|A|A|675
6SZS|1|A|A|676
6SZS|1|A|A|677
6SZS|1|A|C|678
*
6SZS|1|A|G|799
6SZS|1|A|A|800
6SZS|1|A|G|801
6SZS|1|A|A|802
6SZS|1|A|U|803
6SZS|1|A|A|804
6SZS|1|A|G|805
6SZS|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15