IL_6SZS_021
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6SZS|1|A|G|776, 6SZS|1|A|A|788, 6SZS|1|A|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SZS_021 not in the Motif Atlas
- Homologous match to IL_7A0S_021
- Geometric discrepancy: 0.0765
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6SZS|1|A|G|775
6SZS|1|A|G|776
6SZS|1|A|G|777
*
6SZS|1|A|C|787
6SZS|1|A|A|788
6SZS|1|A|A|789
6SZS|1|A|U|790
6SZS|1|A|C|791
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
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