Motif IL_89509.1 Version IL_89509.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9DFE_021 | 9DFE | 0.1376 | 4 | 1A | LSU rRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW | |
| 2 | IL_9E6Q_032 | 9E6Q | 0.1134 | 4 | Multiple bulged bases (H) | 1 | LSU rRNA | G | 893 | G | 895 | * | C | 905 | C | 909 | cWW | cWW |
| 3 | IL_8B0X_085 | 8B0X | 0.1196 | 4 | Multiple bulged bases (H) | a | LSU rRNA | G | 777 | G | 779 | * | C | 789 | C | 793 | cWW | cWW |
| 4 | IL_4WF9_027 | 4WF9 | 0.1414 | 4 | Multiple bulged bases | X | LSU rRNA | G | 820 | G | 822 | * | C | 832 | C | 836 | cWW | cWW |
| 5 | IL_7A0S_021 | 7A0S | 0.1129 | 4 | Multiple bulged bases | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
| 6 | IL_8P9A_261 | 8P9A | 0.0000 | 4 | Multiple bulged bases (H) | AR | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
| 7 | IL_8OI5_036 | 8OI5 | 0.0331 | 4 | 1 | LSU rRNA | G | 903 | G | 905 | * | U | 915 | C | 919 | cWW | cWW | |
| 8 | IL_8GLP_062 | 8GLP | 0.0391 | 4 | L5 | LSU rRNA | G | 1624 | G | 1626 | * | U | 1636 | C | 1640 | cWW | cWW | |
| 9 | IL_9AXU_032 | 9AXU | 0.0531 | 4 | 2 | LSU rRNA | G | 939 | G | 941 | * | U | 951 | C | 955 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*UAAUC | 3 |
| GGA*UAACC | 2 |
| GGG*CAA(OMU)C | 1 |
| GGG*CAAUC | 1 |
| GCG*CAAUC | 1 |
| GG*UAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAU | 4 |
| G*AAC | 2 |
| G*AA(OMU) | 1 |
| C*AAU | 1 |
| (OMG)*AAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Multiple bulged bases (H) (3)
- Multiple bulged bases (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.10 | Max 0.17
Coloring options: