3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
6SZS|1|a|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_146 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.0794
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6SZS|1|a|U|662
6SZS|1|a|A|663
6SZS|1|a|G|664
6SZS|1|a|A|665
6SZS|1|a|G|666
*
6SZS|1|a|U|740
6SZS|1|a|G|741
6SZS|1|a|G|742
6SZS|1|a|A|743

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain o
30S ribosomal protein S15
Chain r
30S ribosomal protein S18

Coloring options:


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