IL_6SZS_161
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GG*UCAUC
- Length
- 7 nucleotides
- Bulged bases
- 6SZS|1|a|C|1200, 6SZS|1|a|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SZS_161 not in the Motif Atlas
- Homologous match to IL_5J7L_048
- Geometric discrepancy: 0.087
- The information below is about IL_5J7L_048
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6SZS|1|a|G|1057
6SZS|1|a|G|1058
*
6SZS|1|a|U|1199
6SZS|1|a|C|1200
6SZS|1|a|A|1201
6SZS|1|a|U|1202
6SZS|1|a|C|1203
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
- Chain y
- Uncharacterized protein YqkK
Coloring options: