IL_6SZS_171

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6SZS|1|a|C|1400, 6SZS|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_171 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6SZS|1|a|C|1399
6SZS|1|a|C|1400
6SZS|1|a|G|1401
*
6SZS|1|a|C|1501
6SZS|1|a|A|1502
6SZS|1|a|A|1503
6SZS|1|a|G|1504

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

mRNA

Chain x

Transfer RNA; tRNA

Chain z

Peptide chain release factor 2