IL_6SZS_181

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_181 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0757

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6SZS|1|A|G|1666
6SZS|1|A|G|1667
6SZS|1|A|A|1668
6SZS|1|A|A|1669
6SZS|1|A|C|1670
6SZS|1|A|U|1671
6SZS|1|A|A|1672
6SZS|1|A|G|1673
6SZS|1|A|G|1674
*
6SZS|1|A|C|1990
6SZS|1|A|U|1991
6SZS|1|A|G|1992
6SZS|1|A|U|1993
6SZS|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14