3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
AGAAU*GGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_185 not in the Motif Atlas
Homologous match to IL_5J7L_361
Geometric discrepancy: 0.0733
The information below is about IL_5J7L_361
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6SZS|1|a|A|673
6SZS|1|a|G|674
6SZS|1|a|A|675
6SZS|1|a|A|676
6SZS|1|a|U|677
*
6SZS|1|a|G|713
6SZS|1|a|G|714
6SZS|1|a|A|715
6SZS|1|a|A|716
6SZS|1|a|U|717

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain r
30S ribosomal protein S18
Chain u
30S ribosomal protein S21

Coloring options:


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