IL_6T3K_011

3D structure

PDB id

6T3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAUAGUAC*GGAAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3K_011 not in the Motif Atlas

Geometric match to IL_3IGI_011

Geometric discrepancy: 0.0915

The information below is about IL_3IGI_011

Detailed Annotation

8x6 Sarcin-Ricin with inserted A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_61286.1

Basepair signature

cWW-L-R-L-R-L-tWH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6T3K|1|A|C|296
6T3K|1|A|A|297
6T3K|1|A|U|298
6T3K|1|A|A|299
6T3K|1|A|G|300
6T3K|1|A|U|301
6T3K|1|A|A|302
6T3K|1|A|C|303
*
6T3K|1|A|G|316
6T3K|1|A|G|317
6T3K|1|A|A|318
6T3K|1|A|A|319
6T3K|1|A|G|320
6T3K|1|A|G|321

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains