IL_6T3R_007

3D structure

PDB id

6T3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.57 Å

Loop

Sequence

UAGGU*ACAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3R_007 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3236

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6T3R|1|A|U|158
6T3R|1|A|A|159
6T3R|1|A|G|160
6T3R|1|A|G|161
6T3R|1|A|U|162
*
6T3R|1|A|A|215
6T3R|1|A|C|216
6T3R|1|A|A|217
6T3R|1|A|G|218
6T3R|1|A|A|219

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains