IL_6T3S_004

3D structure

PDB id

6T3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

UGU*AA

Length

5 nucleotides

Bulged bases

6T3S|1|A|G|83

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3S_004 not in the Motif Atlas

Geometric match to IL_5TBW_037

Geometric discrepancy: 0.2606

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6T3S|1|A|U|82
6T3S|1|A|G|83
6T3S|1|A|U|84
*
6T3S|1|A|A|99
6T3S|1|A|A|100

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains